SNP Profiles matching B12/1 [POU]

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_Input profile	CC	GG	CG	CT	TT	CC	CC	GT	TT	CC	TT	AG	CC	AG
1._B_12_/1_[POU]	CC	GG	CG	CT	TT	CC	CC	GT	TT	CC	TT	AG	CC	AG
2._GC-05-093-2-44	CC	GG	CG	CT	TT	CC	CC	GT	TT	CC	TT	AG	CC	AG
3._B_12_/1_[POU]	CC	GG	CG	CT	TT	CC	CC	GT	TT	CC	TT	AG	CC	AG
4._B_12_/1_[POU]	CC	GG	CG	CT	TT	_	CC	GT	TT	CC	TT	AG	CC	AG
5._B_12_/1_[POU]	CC	GG	CG	CT	TT	_	CC	GT	TT	CC	TT	AG	CC	AG
6._B_12_/1_[POU]	CC	GG	CG	CT	TT	_	CC	GT	TT	CC	TT	AG	CC	AG
7._GC-05-093-2-44	CC	GG	CG	CT	TT	_	CC	GT	TT	CC	TT	AG	CC	AG
8._GC-05-093-2-44	CC	GG	CG	CT	TT	_	CC	GT	TT	CC	TT	AG	CC	AG
9._GC-05-093-2-44	CC	GG	CG	CT	TT	_	CC	GT	TT	CC	TT	AG	CC	AG
10._PA_121_[PER]	CC	GG	CG	CT	TT	_	CC	GT	TT	CC	TT	AG	CC	AG
11._GC-05-011-1-11	CC	GG	CG	CT	TT	_	CC	GT	TT	CC	TT	AG	CC	AG
12._B_12_/1_[POU]	CC	GG	CG	CT	TT	_	CC	GT	TT	CC	TT	AG	CC	AG
13._GC-05-093-2-44	CC	GG	CG	CT	TT	_	CC	GT	TT	CC	TT	AG	CC	AG
14._RUQ_1541	_	GG	CG	CT	_	_	_	GT	_	_	_	_	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AA	GG	CT	CT	GG	GT	AA	CC	CC	GG	GT	CT	CC
1._B_12_/1_[POU]	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
2._GC-05-093-2-44	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
3._B_12_/1_[POU]	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
4._B_12_/1_[POU]	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
5._B_12_/1_[POU]	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
6._B_12_/1_[POU]	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
7._GC-05-093-2-44	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
8._GC-05-093-2-44	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
9._GC-05-093-2-44	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
10._PA_121_[PER]	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
11._GC-05-011-1-11	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
12._B_12_/1_[POU]	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
13._GC-05-093-2-44	CT	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC
14._RUQ_1541	_	_	_	_	TT	GG	GT	_	CC	CC	GG	GT	CT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
1._B_12_/1_[POU]	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
2._GC-05-093-2-44	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
3._B_12_/1_[POU]	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
4._B_12_/1_[POU]	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
5._B_12_/1_[POU]	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
6._B_12_/1_[POU]	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
7._GC-05-093-2-44	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
8._GC-05-093-2-44	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
9._GC-05-093-2-44	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
10._PA_121_[PER]	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
11._GC-05-011-1-11	AA	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X
12._B_12_/1_[POU]	AA	AG	TT	CC	AA	CC	AA	_	GT	CC	AA	GG	X_X	X_X
13._GC-05-093-2-44	AA	AG	TT	CC	AA	CC	AA	_	GT	CC	AA	GG	X_X	X_X
14._RUQ_1541	AA	_	TT	CC	AA	CC	AA	CT	GT	CC	_	_	X_X	X_X

Input profile: B_12_/1_[POU] RUQ_1541

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._B_12_/1_[POU]

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5244 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._B_12_/1_[POU] GC-05-093-2-44

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

3._B_12_/1_[POU]

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F461 T10

Dapeng Zhang, 2016

4._B_12_/1_[POU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5244 1 > FP

Dapeng Zhang, 2016

5._B_12_/1_[POU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5244 5

Dapeng Zhang, 2016

6._B_12_/1_[POU]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5244 4

Dapeng Zhang, 2016

7._B_12_/1_[POU] GC-05-093-2-44

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

8._B_12_/1_[POU] GC-05-093-2-44

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

9._B_12_/1_[POU] GC-05-093-2-44

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._PA_121_[PER]

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._PA_121_[PER] GC-05-011-1-11

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

12._B_12_/1_[POU]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5244 3

Dapeng Zhang, 2016

13._B_12_/1_[POU] GC-05-093-2-44

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._B_12_/1_[POU] RUQ_1541

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25